GP5d binary STARR-seq template-switch TSS motif positioning
Sequence determinants of human gene regulatory elementsTemplate-switch libraries from two GP5d binary STARR-seq RNA replicates captured 5′ transcript ends and localized transcription start sites within active random promoters. The table reports motif-match counts by position and strand relative to the TSS rather than an RNA/input activity ratio.
Processed tables are specific to each experiment. Column names, units, measurements, and table structure are not standardized across the database. Check this experiment’s column definitions and quality-control notes before comparing or combining data.
Perturbation & assay details
Basal / Untreated
Template-switch chemistry captured 60-bp flanks around each TSS from the binary STARR-seq reporter, with the deposited GSE180155 table combining two GP5d template-switch replicates. Motif matches were identified with the source motif models and are summarized relative to the inferred TSS.
Processed data
50 rows per page. Click a cell to inspect its full value.
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Filters apply to this table only. The CSV download contains the complete processed table; filtered rows are available through the API.
Column dictionary · 8 definitions
- motif_model
- Position-frequency-matrix model name
- tf
- Transcription-factor label associated with the motif model
- position_relative_to_tss
- Motif position relative to the inferred transcription start site
- strand
- Motif-match strand
- motif_match_count
- Number of template-switch sequences with a match at this position
- motif_type
- Source motif category
- source_series
- GEO series containing the template-switch output
- template_switch_replicates
- Template-switch replicate provenance
Quality control
The source contained 238,239 rows. Package QC required positions within -60 to +60 bp, nonnegative integer motif-match counts, valid strand values, and valid motif identifiers; all rows passed and were retained.
Curation notes
This is a derived TSS-positioning readout from the binary GP5d assay, not a separate reporter library or cell-line condition. It is retained because it directly reports promoter/TSS sequence determinants.