Approximately 500-bp sheared human genomic fragments were CpG-methylated before assay in wild-type GP5d cells using an episomal STARR-seq reporter. This table contains the source MACS2 narrowPeak calls for active genomic reporter fragments.
Processed tables are specific to each experiment. Column names, units, measurements, and table structure are not standardized across the database. Check this experiment’s column definitions and quality-control notes before comparing or combining data.
Organism
Human
Taxonomy ID
NCBITaxon:9606
Biosample
CVCL:1235
Reference genome
hg19
Design focus
Region-focused
Region of interest
Unbiased whole-genome assay (*)
Perturbation & assay details
CpG methylated with M.SssI; wild-type GP5d
Unbiased human genomic DNA fragments were cloned into the 3′ UTR of the pCpG-free-Sasaki-SS reporter and measured by STARR-seq. The source is the hg19 GSE180152 narrowPeak call set; the genomic library was treated with M.SssI to methylate CpGs before transfection.
Processed data
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Visible columns (14 of 14)
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Filters apply to this table only. The CSV download contains the complete processed table; filtered rows are available through the API.
Column dictionary · 14 definitions
sample_accession
GEO sample accession
replicate
Replicate or source sample label
chrom
hg19 chromosome
start
Zero-based genomic start coordinate
end
Half-open genomic end coordinate
peak_name
Source peak identifier
score
Source BED/narrowPeak display score
strand
Source strand field
signal_value
MACS2 signal value
neg_log10_p_value
MACS2 -log10 nominal p-value
neg_log10_q_value
MACS2 -log10 q-value
summit_offset
Peak summit offset from start
summit_coordinate
Derived hg19 summit coordinate
peak_length
Derived peak length in bases
Quality control
The source peak file is the paper's MACS2/blacklist-filtered processed output. Package QC required integer hg19 coordinates with start < end, valid strands, and finite peak statistics; all 13,108 peaks passed and were retained.
Curation notes
This condition is the wild-type GP5d methylated (M) sample GSM5454434. Methylation changes the reporter-library treatment; the table remains a region-level peak call set rather than a variant-effect table.